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GT-ENCSEQ-BITEXTRA(1) GenomeTools Manual GT-ENCSEQ-BITEXTRA(1)

NAME

gt-encseq-bitextract - Extracts internal data from encoded sequences.

SYNOPSIS

gt encseq bitextract [option ...] [indexname]

DESCRIPTION

-mirrored [yes|no]

mirror sequence (default: no)

-stoppos [value]

output stop positions (default: undefined)

-specialranges [yes|no]

output special ranges (default: no)

-bitpos [value]

extract and display two bit encoding for position (default: undefined)

-dir [string]

specify reading direction (fwd, cpl, rev, rcl) (default: fwd)

-help

display help and exit

-version

display version information and exit

REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.

04/27/2024 GenomeTools 1.6.5