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GT-ENCSEQ2SPM(1) GenomeTools Manual GT-ENCSEQ2SPM(1)

NAME

gt-encseq2spm - Compute suffix prefix matches from encoded sequence.

SYNOPSIS

gt encseq2spm [option ...] [file]

DESCRIPTION

-l [value]

specify the minimum length (default: 0)

-parts [value]

specify the number of parts (default: 0)

-memlimit [string]

specify maximal amount of memory to be used during index construction (in bytes, the keywords MB and GB are allowed) (default: undefined)

-singlestrand [yes|no]

use only the forward strand of the sequence (default: no)

-spm [string]

specify output for spms (default: undefined)

-ii [string]

specify the input sequence (default: undefined)

-v [yes|no]

be verbose (default: no)

-help

display help and exit

-version

display version information and exit

REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.

04/27/2024 GenomeTools 1.6.5