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GT-SEQFILTER(1) GenomeTools Manual GT-SEQFILTER(1)

NAME

gt-seqfilter - Filter the given sequence file(s) and show the results on stdout.

SYNOPSIS

gt seqfilter [option ...] [sequence_file ...]

DESCRIPTION

-minlength [value]

set minimum length a sequence must have to pass the filter (default: undefined)

-maxlength [value]

set maximum length a sequence can have to pass the filter (default: undefined)

-maxseqnum [value]

set the maximum number of sequences which can pass the filter (default: undefined)

-sample [value]

set a probability for each sequence to pass the filter (default: 1.000000)

-step [value]

only every step-th sequence passes the filter (default: 1)

-nowildcards [yes|no]

filter out seqences containing wildcards (default: no)

-width [value]

set output width for FASTA sequence printing (0 disables formatting) (default: 0)

-o [filename]

redirect output to specified file (default: undefined)

-gzip [yes|no]

write gzip compressed output file (default: no)

-bzip2 [yes|no]

write bzip2 compressed output file (default: no)

-force [yes|no]

force writing to output file (default: no)

-help

display help and exit

-version

display version information and exit

REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.

04/27/2024 GenomeTools 1.6.5