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GRAPHLAN_ANNOTATE(1) User Commands GRAPHLAN_ANNOTATE(1)

NAME

graphlan_annotate - GraPhlAn annotate module

SYNOPSIS

graphlan_annotate [-h] [--annot annotation_file] [-v] input_tree [output_tree]

DESCRIPTION

GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. It focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.

graphlan_annotate is the annotate module of graphlan(1).

OPTIONS

positional arguments:

the input tree in Newick, Nexus, PhyloXML or plain text format
the output tree in PhyloXML format containing the newly added annotations. If not specified, the input tree file will be overwritten

optional arguments:

show this help message and exit
specify the annotation file
Prints the current GraPhlAn version and exit

SEE ALSO

graphlan(1)

AUTHOR

The software was written by Nicola Segata <nsegata@hsph.harvard.edu>

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

June 2016 graphlan_annotate 1.1