| KMC_TOOLS-COMPACT(1) | KMC_TOOLS-COMPACT(1) |
NAME¶
kmc_tools-compact - remove counters of k-mers
SYNOPSIS¶
kmc_tools compact <inputdb> [input_params] <output>
DESCRIPTION¶
This command removes counters from the database and stores only k-mers.
OPTIONS¶
For each input there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value>
times
-cx<value>
exclude k-mers occurring more of than <value>
times
EXAMPLE¶
kmc_tools compact wy_kmc2 -ci3 -cx1000 wy_kmc1
AUTHOR¶
KMC was originally written by:
•Sebastian Deorowicz (
<sebastian.deorowicz@polsl.pl>)
•Marek Kokot
•Szymon Grabowski
•Agnieszka Debudaj-Grabysz
COPYING¶
KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.