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FASTQ-INTERLEAVE(1) User Commands FASTQ-INTERLEAVE(1)

NAME

fastq-interleave - Read 2 fastq files, and write them interleaved

SYNOPSIS

fastq-interleave x.fastq y.fastq
fastq-interleave x.fastq.gz y.fastq.gz

DESCRIPTION

Read 2 fastq files, and write them interleaved. Keep just the first word of header lines, and append "/1" and "/2" if they are otherwise identical. Assumes 1 fastq per 4 lines, i.e. no line wrapping.

August 2022 fastq-interleave 1407