table of contents
| MASH(1) | MASH(1) |
NAME¶
mash - fast genome and metagenome distance estimation using MinHash
SYNOPSIS¶
mash <command> [options] [arguments ...]
DESCRIPTION¶
mash is the main executable for the Mash software. The actual functionality is provided by the subtools ('commands'):
Commands¶
bounds
Print a table of Mash error bounds.
dist
Estimate the distance of query sequences to
references.
info
Display information about sketch files.
paste
Create a single sketch file from multiple sketch
files.
screen
Determine whether query sequences are within a larger
pool of sequences.
sketch
Create sketches (reduced representations for fast
operations).
triangle
Estimate a lower-triangular distance matrix.
SEE ALSO¶
mash-dist(1), mash-info(1), mash-paste(1), mash-screen(1), mash-sketch(1), mash-triangle(1)
| 2019-12-13 |