table of contents
- bookworm 2.4.7-11+b1
- testing 2.4.7-13+b1
- unstable 2.4.7-13+b4
- experimental 2.4.7-13.1~exp1
mia-2dimagestats(1) | General Commands Manual | mia-2dimagestats(1) |
NAME¶
mia-2dimagestats - Evaluate some statistics of a 2D image.
SYNOPSIS¶
mia-2dimagestats -i <in-file> [options]
DESCRIPTION¶
mia-2dimagestats This progranm is used to evaluate some statistics of an image. Output is Mean, Variation, Median, and Median Average Distance of the intensity values. The program allows one to set a lower threshold and to cut off a percentage of the high intensity pixels
OPTIONS¶
- -i --in-file=(input, required); io
- input image to be analyzed
For supported file types see PLUGINS:2dimage/io - -t --thresh=10
- intensity thresh to ignore
- -g --high-thresh=0.05
- upper histogram percentage to ignore
- --use-histogram
- Use a histogram to accumulate statistics
Help & Info¶
- -V --verbose=warning
- verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
- --copyright
- print copyright information
- -h --help
- print this help
- -? --usage
- print a short help
- --version
- print the version number and exit
Processing¶
- --threads=-1
- Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
PLUGINS: 2dimage/io¶
- bmp
- BMP 2D-image input/output support. The plug-in supports reading and writing of binary images and 8-bit gray scale images. read-only support is provided for 4-bit gray scale images. The color table is ignored and the pixel values are taken as literal gray scale values.
- datapool
- Virtual IO to and from the internal data pool
- dicom
- 2D image io for DICOM
- exr
- a 2dimage io plugin for OpenEXR images
- jpg
- a 2dimage io plugin for jpeg gray scale images
- png
- a 2dimage io plugin for png images
- raw
- RAW 2D-image output support
- tif
- TIFF 2D-image input/output support
- vista
- a 2dimage io plugin for vista images
EXAMPLE¶
Evaluate the statistics of image input.png. Don't include the upper 1% of intensities in the statistics. The result is written to stdout
mia-2dimagestats -i input.png -g 1
AUTHOR(s)¶
Gert Wollny
COPYRIGHT¶
This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.
v2.4.7 | USER COMMANDS |