table of contents
MINCPIK(1) | User Commands | MINCPIK(1) |
NAME¶
mincpik - MNI medical image format tools
DESCRIPTION¶
Option h is ambiguous (help, horizontal) Usage:
- mincpik [options] <infile>.mnc [<image.type>]
- mincpik generates image files from MINC volumes using the Imagemagick convert utility. Use -help or -man for more information and examples
OPTIONS¶
-v, --verbose
- Be noisy when doing things
--version
- Print version number and exit
-?, --help
- Dump some quick help output
--man
- Dump a man page
-c --clobber
- overwrite the output file if it exists already
-f --fake
- do a dry run, (echo cmds only). This is usually used in combination with -verbose to echo commands only
--scale
- scaling factor for resulting image, by default images are output at twice their original resolution
--width
- autoscale the resulting image to have a fixed image width (in pixels)
--depth
- bitdepth for resulting image 8 or 16 (MSB machines only!)
--title
- add a title to the resulting image, if just this option is specified the text used for the title is the name of the input image file.
--title_text
- use the input string for the title [default: input-filename]. This option must be used in conjunction with -title
--title_size
- font point size for the title
--anot_bar
- create an annotated bar to match the image (use height of the output image)
- Image range and lookup table options:
--range
- valid range of values for MINC file
--image_range
- range of image values to use for pixel intensity
--auto_range
- automatically determine image range using a 5 and 95% PcT. (histogram)
--lookup
- arguments to pass to minclookup
- Slicing options:
-s --slice
- slice number to get. (note this is in voxel co-ordinates)
-z --axial --transverse
- get an axial/transverse (z) slice
-y --coronal
- get a coronal (y) slice
-x --sagittal
- get a sagital (x) slice
- Triplanar options:
-t --triplanar
- create a triplanar view of the input file
--tilesize
- pixel size for each image in a triplanar
--sagittal_offset
- offset the sagittal slice from the centre
--sagittal_offset_perc
- offset the sagittal slice by a percentage from the centre
--vertical
- create a vertical triplanar view (Default)
--horizontal
- create a horizontal triplanar view
July 2020 | mincpik 2.3.00 |