table of contents
| RAMPLER(1) | User Commands | RAMPLER(1) |
NAME¶
rampler - module for sampling genomic sequences
DESCRIPTION¶
usage: rampler [options ...] <mode>
<mode>¶
subsample <sequences> <reference length> <coverage> [<coverage> ...]¶
<sequences>
- input file in FASTA/FASTQ format (can be compressed with gzip) containing sequences to be subsampled
<reference length>
- integer denoting length of the reference genome (or assembly) from which the sequences originate
<coverage>
- integer denoting desired coverage of the subsampled sequences
split <sequences> <chunk size>¶
<sequences>
- input file in FASTA/FASTQ format (can be compressed with gzip) containing sequences which will be split into smaller chunks
<chunk size>
- integer denoting the desired chunk size in bytes
OPTIONS¶
-o, --out-directory
- default: current directory path in which sampled files will be created
--version
- prints the version number
-h, --help
- prints the usage
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| June 2018 | rampler 1.1.0 |