NAME¶

Bio::Roary::External::Makeblastdb - Wrapper around NCBIs makeblastdb command

VERSION¶

version 3.13.0

SYNOPSIS¶

Take in a fasta file and create a temporary blast database.

   use Bio::Roary::External::Makeblastdb;
   
   my $blast_database= Bio::Roary::External::Makeblastdb->new(
     fasta_file => 'contigs.fa',
     exec       => 'makeblastdb'
   );
   
   $blast_database->run();

METHODS¶

AUTHOR¶

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE¶

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007