table of contents
| RSEM-GFF3-TO-GTF(1) | User Commands | RSEM-GFF3-TO-GTF(1) |
NAME¶
rsem-gff3-to-gtf - Convert GFF3 files to GTF files.
DESCRIPTION¶
usage: rsem-gff3-to-gtf [-h] [--make-genes-as-transcripts]
- [--RNA-patterns <patterns>]
- [--extract-sequences <output.fa>] input_GFF3_file output_GTF_file
Convert GFF3 files to GTF files.
positional arguments:¶
- input_GFF3_file
- Input GFF3 file.
- output_GTF_file
- Output GTF file.
optional arguments:¶
- -h, --help
- show this help message and exit
- --make-genes-as-transcripts
- GFF3 file does not contain transcripts, make each gene as a transcript. (default: False)
- --RNA-patterns <patterns>
- Types of RNAs to be extracted, e.g. mRNA,rRNA (default: None)
- --extract-sequences <output.fa>
- If GFF3 file contains reference sequences, extract them to the specified file (default: None)
| September 2021 | rsem-gff3-to-gtf 1.3.3+dfsg |