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GFADIFF(1)   GFADIFF(1)

NAME

gfadiff - compare two GFA files

SYNOPSIS

gfadiff [-h] [-s] [-l] [-c] [-p] [-i] [-script] <gfa1> <gfa2>

DESCRIPTION

If a combination of -h,-s,-l,-c and/or -p is specified, then only record of the specified type [h=headers, s=segments, l=links, c=containments, p=paths] are compared. (default: -h -s -l -c -p)

OTHER OPTIONS

-i

output message if identical

-script

create Ruby script to transform gfa1 into gfa2

SEE ALSO

rgfa-simdebruijn(1), rgfa-findcrispr(1), rgfa-mergelinear(1)

BUGS

Please report bugs to the RGFA issue tracker: <https://github.com/ggonnella/rgfa/issues>