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TREE_RECON(1)

TREE_RECON(1)

NAME¶

tree_recon - Tree reconstruction

SYNOPSIS¶

tree_recon [OPTIONS] -m IN.DIST

DESCRIPTION¶

Reconstruct phylogenetic tree from Phylip matrix IN.DIST.

OPTIONS¶

-h, --help: Display the help message.
--version: Display version information.

Input / Output:¶

-m, --matrix INPUT_FILE: Name Phylip distance matrix file. Must contain at least three species. Valid filetype is: .dist.
-o, --out-file OUTPUT_FILE: Path to write output to. Valid filetypes are: .newick and .dot. Default: tree.dot.

Algorithm Options:¶

-b, --build STRING: Tree building method. nj: neighbour-joining, min: UPGMA single linkage, max: UPGMA complete linkage, avg: UPGMA average linkage, wavg: UPGMA weighted average linkage. Neighbour-joining creates an unrooted tree. We root that tree at the least joined pair. One of nj, min, max, avg, and wavg. Default: nj.

CONTACT AND REFERENCES¶

For questions or comments, contact:: Tobias Rausch <rausch@embl.de>
SeqAn Homepage:: http://www.seqan.de

tree_recon 1.4.8 [tarball]