table of contents
| NEEDLE(1) | NEEDLE(1) |
NAME¶
needle -
DESCRIPTION¶
Needle allows you to build an Interleaved Bloom Filter (IBF) with the command ibf or estimate the expression of transcripts with the command estimate.
SUBCOMMANDS¶
This program must be invoked with one of the following
subcommands:
- count
- delete
- estimate
- genome
- ibf
- ibfmin
- insert
- insertmin
- minimiser
See the respective help page for further details (e.g. by calling needle count -h).
The following options below belong to the top-level parser and need to be specified before the subcommand key word. Every argument after the subcommand key word is passed on to the corresponding sub-parser.
OPTIONS¶
Basic options:¶
- -h, --help
- Prints the help page.
- -hh, --advanced-help
- Prints the help page including advanced options.
- --version
- Prints the version information.
- --copyright
- Prints the copyright/license information.
- --export-help (std::string)
- Export the help page information. Value must be one of [html, man].
VERSION¶
Last update:
needle version: 1.0.0
SeqAn version: 3.3.0
LEGAL¶
Author: Mitra Darvish
SeqAn Copyright: 2006-2023 Knut Reinert, FU-Berlin; released under the
3-clause BSDL.
| needle 1.0.0 |