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SUBINDEL(1) User Commands SUBINDEL(1)

NAME

subindel - toolkit for processing next-gen sequencing data

DESCRIPTION

SubIndel: detect short and long indels

Usage:

subindel -i <SAM file> -g <subread index> -o <output VCF> {-d <expected fragment distance>} {-I <max indel length>} {--paired-end}

Example:

subindel -i my_paired_end_reads.SAM -g my_index -o my_result -d 300 -I 200 --paired-end

AUTHOR


This manpage was written by Alexandre Mestiashvili for the Debian distribution and
can be used for any other usage of the program.

March 2023 subindel 2.0.3