NAME¶

alignment-find - Find the last (or first) FASTA alignment in a file.

SYNOPSIS¶

alignment-find [OPTIONS] < in-file

DESCRIPTION¶

Find the last (or first) FASTA alignment in a file.

ALLOWED OPTIONS:¶

-h, –help

produce help message

–alphabet arg

Specify the alphabet: DNA, RNA, Amino-Acids, Amino-Acids+stop, Triplets, Codons, or Codons+stop.

–first

get the first alignment in the file

–last

get the last alignment in the file (default)

REPORTING BUGS:¶

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS¶

Benjamin Redelings.