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BARRNAP(1) User Commands BARRNAP(1)

NAME

barrnap - rapid ribosomal RNA prediction

SYNOPSIS

barrnap [options] <chromosomes.fasta>

DESCRIPTION

Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).

OPTIONS

This help
Print version and exit
Print citation for referencing barrnap
Kingdom: mito bac arc euk (default 'bac')
No screen output (default OFF)
Number of threads/cores/CPUs to use (default '8')

--lencutoff [n.n] Proportional length threshold to label as partial (default '0.8')

Proportional length threshold to reject prediction (default '0.5')
Similarity e-value cut-off (default '1e-09')
Include FASTA input sequences in GFF3 output (default OFF)
November 2014 barrnap 0.4.2