NAME¶

tradis_gene_insert_sites - Generate insertion site details from TraDIS pipeline plots

VERSION¶

version 1.4.5

SYNOPSIS¶

DESCRIPTION¶

This script is for TRADIS analysis. It takes in a plot file created by the TRADIS pathogen informatics pipeline, and an embl file of annotation. It then outputs a tab delimited file with the insert site details. This is then used as input to an R script to calculate essentialit y.

NAME¶

tradis_gene_insert_sites.pl

CONTACT¶

path-help@sanger.ac.uk Original author: Lars Barquist

METHODS¶

AUTHOR¶

Carla Cummins <path-help@sanger.ac.uk>

COPYRIGHT AND LICENSE¶

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007