table of contents
BP_MAKE_MRNA_PROTEIN(1p) | User Contributed Perl Documentation | BP_MAKE_MRNA_PROTEIN(1p) |
NAME¶
bp_make_mrna_protein - Convert an input mRNA/cDNA sequence into protein
DESCRIPTION¶
Convert an input mRNA/cDNA sequence into protein using translate()
-f/--frame Specifies frame [0,1,2]
One can also specify:
-t/--terminator Stop Codon character (defaults to '*') -u/--unknown Unknown Protein character (defaults to 'X') -cds/--fullcds Expected Full CDS (with start and Stop codon) -throwOnError Throw error if no Full CDS (defaults to 0) -if/--format Input format (defaults to FASTA/Pearson) -of/--format Output format (defaults to FASTA/Pearson) -o/--output Output Filename (defaults to STDOUT) -i/--input Input Filename (defaults to STDIN) -ct/--codontable Codon table to use (defaults to '1')
See Bio::PrimarySeq for more information on codon tables and the translate() method
AUTHOR - Jason Stajich¶
Email jason-at-bioperl-dot-org
2021-08-15 | perl v5.32.1 |