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BOWTIE-ALIGN-S(1) User Commands BOWTIE-ALIGN-S(1)

NAME

bowtie-align-s - ultrafast memory-efficient short read aligner

DESCRIPTION

usage: bowtie [-h] [--verbose] [--debug] [--large-index]

options:

show this help message and exit

--verbose

--debug

--large-index

64-bit Built on Debian-reproducible Thu, 25 Jan 2024 12:27:31 +0100 Compiler: gcc version 13.2.0 Options: -O3 -Wl,--hash-style=both -DPOPCNT_CAPABILITY -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=.=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -ffile-prefix-map=.=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++03 -Wl,-z,relro -Wl,-z,now Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}

January 2024 bowtie-align-s version 1.3.1