USAGE:¶

create_zoomed_maps -p DIR -c INTEGER -z INTEGER [Options]

DESCRIPTION:¶

Creates a zoomed map for completed CCT project.

REQUIRED ARGUMENTS:¶

-p, --project DIR

Path to a completed CCT project.

-c, --center INTEGER

Nucleotide position to center the zoomed map on.

-z, --zoom INTEGER

Zoom multiplier.

OPTIONAL ARGUMENTS:¶

-f, --format STRING

Image format for output map. Options are png, jpg, svg, svgz. (Default: png)

-m, --memory STRING

Memory value for Java's -Xmx option (Default: 1500m).

-h, --help

Show this message

EXAMPLE:¶

create_zoomed_maps -p my_project -c 10000 -z 10 -format svg