NAME¶

gff2sga.pl - convert gff to sga

DESCRIPTION¶

gff2sga.pl [options] <GFF file>

where options are:

-h|--help

Show this stuff

--db <path>

Use <path> to locate Chrom Id Storable File 'chro_idx.nstorage'

-f|--feature <feature>

Set Feature name <feature>

-s|--species <species>

Assembly <species> (i.e hg18)

-c

Generate a Centered SGA file

-u

Generate an Unoriented SGA file

-x

Generate an extended SGA file with the 6th field equal to the GFF 'feature' field, and the feature field equal to the GFF 'source'

AUTHOR¶

This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.