table of contents
| fit_spline_xform(1) | The Computational Morphometry Toolkit | fit_spline_xform(1) |
NAME¶
fit_spline_xform - Fit Single B-Spline Transformation to Concatenated Transformation List
SYNOPSIS¶
fit_spline_xform InputImage XformList
DESCRIPTION¶
Fit a parametric nonrigid transformation (B-spline free-form deformation) to a list of concatenated, optionally inverted, transformations.
OPTIONS¶
Global Toolkit Options (these are shared by all CMTK tools)¶
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard output.
- --wiki
- Write list of command line options to standard output in MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads and OpenMP).
Fitting Options¶
- --levels <integer>
- Number of levels in the multi-level B-spline approximation procedure. [Default: 1]
- --fit-affine-first
- Fit affine transformation first, then initialize spline with it.
- --final-cp-spacing <double>
- Final control point grid spacing of the output B-spline transformation. [Default: 0]
- --final-cp-dims <string>
- Final control point grid dimensions (i.e., number of controlpoints) of the output B-spline transformation. To be provided as 'dimX,dimY,dimZ'. [Default: NONE]
Input Options¶
- --inversion-tolerance <double>
- Numerical tolerance of B-spline inversion in mm. Smaller values will lead to more accurate inversion, but may increase failure rate. [Default: 1e-08]
Output Options¶
- --output <transformation-path>, -o <transformation-path>
- Path for the output transformation. [Default: NONE]
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE¶
BUGS¶
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
| Jul 7 2024 | CMTK 3.3.1p2 |