table of contents
| mk_adni_phantom(1) | The Computational Morphometry Toolkit | mk_adni_phantom(1) |
NAME¶
mk_adni_phantom - Generate ADNI phantom image
SYNOPSIS¶
mk_adni_phantom OutputImage
DESCRIPTION¶
Generate image of the ADNI structural imaging calibration phantom (a.k.a. Magphan EMR051).
OPTIONS¶
Global Toolkit Options (these are shared by all CMTK tools)¶
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard output.
- --wiki
- Write list of command line options to standard output in MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options¶
- --resolution <double>
- Set output image resolution in [mm] [Default: 1]
- --labels
- Draw each marker sphere with a label value defined by its index in the marker table. Otherwise, estimated T1 is used.
- --write-labels <string>
- Optional path to write text file with label names. [Default: NONE]
- --write-landmarks <string>
- Optional path to write text file with landmark locations. [Default: NONE]
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE¶
BUGS¶
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
| Jul 7 2024 | CMTK 3.3.1p2 |