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DALIGNER(1) General Commands Manual DALIGNER(1)


daligner - local alignment discovery between long nucleotide sequencing reads


daligner [options] files...


These tools permit one to find all significant local alignments between reads encoded in a Dazzler database. The assumption is that the reads are from a Pacific Biosciences RS II long read sequencer. That is, the reads are long and noisy, up to 15% on average.


For a complete description of available commands and their options, see /usr/share/doc/daligner/
October 2016