table of contents
| QUAL_TRIM.PY(1) | User Commands | QUAL_TRIM.PY(1) |
NAME¶
qual_trim.py - Perform quality trimming for single-end reads.
DESCRIPTION¶
usage: qual_trim.py [-h] [-b BASE] [-p PROB] [-q SCORE] [-l BP] [--illumina5]
- [--solexa]
- FASTQ
Perform quality trimming for single-end reads.
positional arguments:¶
- FASTQ
- including stdin or compressed file {zip,gz,tar,bz}
optional arguments:¶
- -h, --help
- show this help message and exit
- -b BASE
- ASCII-encoded quality offset, e.g. 33 or 64 (default: 33)
- -p PROB
- error probability cutoff (default: 0.1)
- -q SCORE
- quality score cutoff (default: '-p 0.1')
- -l BP
- minimum read length in bp (default: 16)
- --illumina5
- Illumina 1.5+ encoding marked with 'B'
- --solexa
- Solexa encoding
AUTHOR¶
This manpage was written by Andreas Tille for the Debian
distribution and
can be used for any other usage of the program.
| March 2020 | qual_trim.py 1.1 |