Scroll to navigation

DBXFASTA(1e) EMBOSS Manual for Debian DBXFASTA(1e)

NAME

dbxfasta - Index a fasta file database using b+tree indices

SYNOPSIS

dbxfasta -dbname string -dbresource string -idformat list -directory directory -filenames string -fields list -compressed boolean -release string -date string -exclude string -indexoutdir outdir -outfile outfile

dbxfasta -help

DESCRIPTION

dbxfasta is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Utils:Database indexing" command group(s).

OPTIONS

Input section

-dbname string

-dbresource string

-idformat list

Default value: idacc

-directory directory

Default value: .

-filenames string

Default value: *.fasta

Required section

-fields list

Default value: id,acc

-compressed boolean

Default value: Y

Advanced section

-release string

Default value: 0.0

-date string

Default value: 00/00/00

-exclude string

Output section

-indexoutdir outdir

Default value: .

-outfile outfile

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

dbxfasta is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0