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MAKENUCSEQ(1e) EMBOSS Manual for Debian MAKENUCSEQ(1e)

NAME

makenucseq - Create random nucleotide sequences

SYNOPSIS

makenucseq -codonfile codon -amount integer -length integer [-useinsert toggle] -insert string -start integer -makeseq seqoutall

makenucseq -help

DESCRIPTION

makenucseq is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Edit" command group(s).

OPTIONS

Input section

-codonfile codon

Optional codon usage file. Nucleotide sequences will be created as triplets matching the frequencies in the file, with the end trimmed to be in the correct reading frame.

Required section

-amount integer

Default value: 100

-length integer

Default value: 100

-useinsert toggle

Default value: N

-insert string

String that is inserted into sequence

-start integer

Default value: 1

Output section

-makeseq seqoutall

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

makenucseq is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0