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PEPWINDOWALL(1e) EMBOSS Manual for Debian PEPWINDOWALL(1e)

NAME

pepwindowall - Draw Kyte-Doolittle hydropathy plot for a protein alignment

SYNOPSIS

pepwindowall -sequences seqset [-datafile datafile] [-length integer] [-normalize boolean] -graph xygraph

pepwindowall -help

DESCRIPTION

pepwindowall is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:Properties" command group(s).

OPTIONS

Input section

-sequences seqset

File containing a sequence alignment

-datafile datafile

Default value: Enakai.dat

Additional section

-length integer

Default value: 19

-normalize boolean

Default value: N

Output section

-graph xygraph

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

pepwindowall is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0