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TEXTSEARCH(1e) EMBOSS Manual for Debian TEXTSEARCH(1e)

NAME

textsearch - Search the textual description of sequence(s)

SYNOPSIS

textsearch -sequence seqall -pattern string [-casesensitive boolean] [-html boolean] -only boolean -heading boolean -usa boolean -accession boolean -name boolean -description boolean -outfile outfile

textsearch -help

DESCRIPTION

textsearch is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Data retrieval:Text data" command group(s).

OPTIONS

Input section

-sequence seqall

Required section

-pattern string

The search pattern is a regular expression. Use a | to indicate OR. For example: human|mouse will find text with either 'human' OR 'mouse' in the text

Additional section

-casesensitive boolean

Default value: N

Output section

-html boolean

Default value: N

-only boolean

This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying: '-nohead -noname -nousa -noacc -nodesc' to get only the name output, you can specify '-only -name' Default value: N

-heading boolean

Default value: @(!$(only))

-usa boolean

Default value: @(!$(only))

-accession boolean

Default value: @(!$(only))

-name boolean

Default value: @(!$(only))

-description boolean

Default value: @(!$(only))

-outfile outfile

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

textsearch is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0