table of contents
| FASTAQ-SEARCH_FOR_SEQ(1) | User Commands | FASTAQ-SEARCH_FOR_SEQ(1) |
NAME¶
fastaq_search_for_seq - Find all exact matches to a string (and its reverse complement)
DESCRIPTION¶
usage: fastaq_search_for_seq [options] <infile> <outfile> <search_string>
Searches for an exact match on a given string and its reverse complement, in every sequence of input sequence file. Case insensitive. Guaranteed to find all hits
positional arguments:¶
- infile
- Name of input file
- outfile
- Name of outputfile. Tab-delimited output: sequence name, position, strand
- search_string
- String to search for in the sequences
options:¶
- -h, --help
- show this help message and exit
| December 2024 | fastaq_search_for_seq 3.17.0 |