table of contents
FASTAQ-SEQUENCE_TRIM(1) | User Commands | FASTAQ-SEQUENCE_TRIM(1) |
NAME¶
fastaq_sequence_trim - Trim exact matches to a given string off the start of every sequence
DESCRIPTION¶
usage: fastaq_sequence_trim [options] <infile_1> <infile_2> <outfile_1> <outfile_2> <trim_seqs>
Trims sequences off the start of all sequences in a pair of sequence files, whenever there is a perfect match. Only keeps a read pair if both reads of the pair are at least a minimum length after any trimming
positional arguments:¶
options:¶
- -h, --help
- show this help message and exit
- --min_length INT
- Minimum length of output sequences [50]
- --revcomp
- Trim the end of each sequence if it matches the reverse complement. This option is intended for PCR primer trimming
December 2024 | fastaq_sequence_trim 3.17.0 |