| LEON(1) | User Commands | LEON(1) |
NAME¶
leon - reference free compression for NGS reads
OPTIONS¶
leon options¶
- -file
- (1 arg) : input file (e.g. FASTA/FASTQ for compress or .leon file for decompress)
- -c
- (0 arg) : compression
- -d
- (0 arg) : decompression
- -nb-cores
- (1 arg) : number of cores (default is the available number of cores) [default '0']
- -lossless
- (0 arg) : switch to lossless compression for qualities (default is lossy. lossy has much higher compression rate, and the loss is in fact a gain. lossy is better!)
compression options¶
- -kmer-size
- (1 arg) : size of a kmer [default '31']
- -abundance
- (1 arg) : abundance threshold for solid kmers (default inferred) [default '']
- -init-iterator
- (0 arg) : init iterator for ibank mode
- -seq-only
- (0 arg) : store dna seq only, header and quals are discarded, will decompress to fasta (same as -noheader -noqual)
- -noheader
- (0 arg) : discard header
- -noqual
- (0 arg) : discard quality scores
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| May 2018 | leon 1.4.1 |