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GT-ENCSEQ-CHECK(1) GenomeTools Manual GT-ENCSEQ-CHECK(1)

NAME

gt-encseq-check - Check the consistency of an encoded sequence file.

SYNOPSIS

gt encseq check [option ...] [file]

DESCRIPTION

-scantrials [value]

specify number of scan trials (default: 0)

-multicharcmptrials [value]

specify number of multicharacter trials (default: 0)

-prefixlength [value]

prefix length (default: 0)

-nocheckunit [yes|no]

do not run checkextractunitatpos (default: no)

-mirrored [yes|no]

use mirrored encseq (default: no)

-v [yes|no]

be verbose (default: no)

-help

display help and exit

-version

display version information and exit

REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.

04/27/2024 GenomeTools 1.6.5