| KALIGNFMT(1) | User Commands | KALIGNFMT(1) |
NAME¶
kalignfmt - Global and progressive multiple sequence alignment
SYNOPSIS¶
kalignfmt-avx2 -i <seq file> -o <out aln>
DESCRIPTION¶
Kalign (3.3.4)
OPTIONS¶
- --format
- : Output format. [Fasta]
- --reformat
- : Reformat existing alignment. [NA]
- --changename
- : Change sequence names to 1 .. N. [NA]
- --unalign
- : Remove gaps and write to fasta. [NA]
- --clean
- : Perform additional checks on alignment. [NA]
- --version (-V/-v)
- : Prints version. [NA]
EXAMPLES¶
Passing sequences via stdin:
- cat input.fa | kalign -f fasta > out.afa
Combining multiple input files:
- kalign seqsA.fa seqsB.fa seqsC.fa -f fasta > combined.afa
COPYRIGHT¶
Copyright © 2006,2019,2020,2021 Timo Lassmann
This program comes with ABSOLUTELY NO WARRANTY; for details type:
`kalign -showw'.
This is free software, and you are welcome to redistribute it under certain
conditions; consult the COPYING file for details.
Please cite:¶
- Lassmann, Timo. "Kalign 3: multiple sequence alignment of large data sets." Bioinformatics (2019) https://doi.org/10.1093/bioinformatics/btz795
| November 2022 | kalignfmt 3.3.4 |