| KMC_TOOLS-KMERS_SUBTRACT(1) | KMC_TOOLS-KMERS_SUBTRACT(1) |
NAME¶
kmc_tools-kmers_subtract - calculate subtraction of two KMC databases
SYNOPSIS¶
kmc_tools kmers_subtract <input1 [input1_params]> <input2 [input2_params]> <output [output_params]>
DESCRIPTION¶
The output database will contains only k-mers that are present in the first input set but absent in the second one. The counter value is equal to the value from the first input set.
OPTIONS¶
For each input there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value>
times
-cx<value>
exclude k-mers occurring more of than <value>
times
For output there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value>
times
-cx<value>
exclude k-mers occurring more of than <value>
times
-cs<value>
maximal value of a counter
EXAMPLE¶
kmc -k28 file1.fastq kmers1 tmp kmc -k28 file2.fastq kmers2 tmp kmc_tools kmers_subtract kmers1 kmers2 kmers1_kmers2_subtract -cs200
AUTHOR¶
KMC was originally written by:
•Sebastian Deorowicz (
<sebastian.deorowicz@polsl.pl>)
•Marek Kokot
•Szymon Grabowski
•Agnieszka Debudaj-Grabysz
COPYING¶
KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.