NAME¶

vcfcheck

SYNOPSIS¶

vcfcheck options

DESCRIPTION¶

Validate integrity and identity of the VCF by verifying that the VCF record’s REF matches a given reference file.

OPTIONS¶

options:


    -f, --fasta-reference  FASTA reference file to use to obtain primer sequences.


    -x, --exclude-failures If a record fails, don't print it.  Otherwise do.


    -k, --keep-failures    Print if the record fails, otherwise not.


    -i, --ignore-case      Ignore case differences between FASTA reference and vcf.


    -h, --help             Print this message.


    -v, --version          Print version.
Type: metrics
    

EXIT VALUES¶

0

Success

not 0

Failure

SEE ALSO¶

vcflib(1)

OTHER¶

LICENSE¶

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS¶

Erik Garrison and vcflib contributors.