NAME¶

vcfremoveaberrantgenotypes

SYNOPSIS¶

vcfremoveaberrantgenotypes

DESCRIPTION¶

strips samples which are homozygous but have observations implying heterozygosity. Remove samples for which the reported genotype (GT) and observation counts disagree (AO, RO).

OPTIONS¶

Type: transformation
    

EXIT VALUES¶

0

Success

not 0

Failure

SEE ALSO¶

vcflib(1)

OTHER¶

LICENSE¶

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

AUTHORS¶

Erik Garrison and vcflib contributors.