NAME¶

vcfstreamsort

SYNOPSIS¶

vcfstreamsort options [vcf file]

DESCRIPTION¶

Sorts the input (either stdin or file) using a streaming sort algorithm. Guarantees that the positional order is correct provided out-of-order variants are no more than 100 positions in the VCF file apart.

OPTIONS¶

options:


    -h, --help             this dialog


    -w, --window N         number of sites to sort (default 10000)


    -a, --all              load all sites and then sort in memory
Type: transformation
    

EXIT VALUES¶

0

Success

not 0

Failure

SEE ALSO¶

vcflib(1)

OTHER¶

LICENSE¶

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

AUTHORS¶

Erik Garrison and vcflib contributors.