table of contents
| COMPARE_GENOMES.PY(1) | User Commands | COMPARE_GENOMES.PY(1) |
NAME¶
compare_genomes.py - find methylation in nanopore reads
DESCRIPTION¶
usage: compare_genomes.py [-h] --bed1 BED1 --bed2 BED2 [-g GENOME_ALIGNMENT]
- [-v]
Compare methylation between two genomes by probabilities of methylation for aligned positions
optional arguments:¶
- -h, --help
- show this help message and exit
- --bed1 BED1
- bed file 1 with verbose output from make_bed.py
- --bed2 BED2
- bed file 2 with verbose output from make_bed.py
- -g GENOME_ALIGNMENT, --genome_alignment GENOME_ALIGNMENT
- an xmfa file from mauve (if absent, alignments assumed to be to the same reference genome)
- -v, --version
- print version
| June 2021 | compare_genomes.py 1.0.3+git20210331.f7a616a |