table of contents
MEGAHIT_CORE_POPCNT(1) | User Commands | MEGAHIT_CORE_POPCNT(1) |
NAME¶
megahit_core_popcnt - ultra-fast and memory-efficient meta-genome assembler
SYNOPSIS¶
megahit_core_popcnt <sub_program> [sub options]
DESCRIPTION¶
- sub-programs:
- assemble
- assemble from SdBG
- local
- local asssembly
- iterate
- extract iterative edges
- buildlib
- build read library
- count
- kmer counting
- read2sdbg
- build sdbg from reads
- seq2sdbg
- build sdbg from megahit contigs + edges
- contig2fastg
- convert MEGAHIT's k*.contigs.fa to fastg format
- readstat
- calculate read stats (# of reads, bases, longest, shortest, average)
- filterbylen
- filter contigs by length
- checkcpu
- check whether the run-time CPU supports POPCNT and BMI2
- checkpopcnt
- check whether the run-time CPU supports POPCNT
- checkbmi2
- check whether the run-time CPU supports BMI2
- dumpversion
- dump version
- kmax
- the largest k value supported
AUTHOR¶
This manpage was written by Shayan Doust for the Debian distribution and can be used for any other usage of the program.
October 2019 | megahit_core_popcnt 1.2.8 |