table of contents
mia-2dseriestovolume(1) | General Commands Manual | mia-2dseriestovolume(1) |
NAME¶
mia-2dseriestovolume - Create a 3D volume from a segmentation series.
SYNOPSIS¶
mia-2dseriestovolume -i <in-file> -o <out-file> [options]
DESCRIPTION¶
mia-2dseriestovolume Obtaines a 3D volume image by combining the images of the segmentation set.
OPTIONS¶
- -i --in-file=(required, input); string
- input segmentation set
- -o --out-file=(output, required); io
- output 3D image
For supported file types see PLUGINS:3dimage/io - -k --skip=0
- number of frames to skip at the beginning of the series.
Help & Info¶
- -V --verbose=warning
- verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
- --copyright
- print copyright information
- -h --help
- print this help
- -? --usage
- print a short help
- --version
- print the version number and exit
Processing¶
- --threads=-1
- Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
PLUGINS: 3dimage/io¶
- analyze
- Analyze 7.5 image
- datapool
- Virtual IO to and from the internal data pool
- dicom
- Dicom image series as 3D
- hdf5
- HDF5 3D image IO
- inria
- INRIA image
- mhd
- MetaIO 3D image IO using the VTK implementation (experimental).
- nifti
- NIFTI-1 3D image IO. The orientation is transformed in the same way like it is done with 'dicomtonifti --no-reorder' from the vtk-dicom package.
- vff
- VFF Sun raster format
- vista
- Vista 3D
- vti
- 3D image VTK-XML in- and output (experimental).
- vtk
- 3D VTK image legacy in- and output (experimental).
EXAMPLE¶
Create the volume volume.v from the series series.set but skip the first two images.
mia-2dseriestovolume -i series.set -k 2 -o volume.v
AUTHOR(s)¶
Gert Wollny
COPYRIGHT¶
This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.
v2.4.7 | USER COMMANDS |