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mia-3dlandmarks-transform(1) General Commands Manual mia-3dlandmarks-transform(1)

NAME

mia-3dlandmarks-transform - Transform 3D landmark positions.

SYNOPSIS

mia-3dlandmarks-transform -i <in-file> -o <out-file> -t <transformation> [options]

DESCRIPTION

mia-3dlandmarks-transform Transform the locations of the landmarks by means of a given 3D transformation. Note, landmark transformations do the inverse of an image transformation (in a manner of speaking), i.e. given a transformation V(x) in an image transformation the pixel intensity at x is set to the original intensity at V(x), while a landmark at x is moved to V(x).

OPTIONS

input landmark set
For supported file types see PLUGINS:3dlandmarklist/io
output landmark set
For supported file types see PLUGINS:3dlandmarklist/io
transformation file
For supported file types see PLUGINS:3dtransform/io

Help & Info

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

trace ‐ Function call trace
debug ‐ Debug output
info ‐ Low level messages
message ‐ Normal messages
warning ‐ Warnings
fail ‐ Report test failures
error ‐ Report errors
fatal ‐ Report only fatal errors
print copyright information

print this help

-? --usage
print a short help

print the version number and exit

Processing

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

PLUGINS: 3dlandmarklist/io

Virtual IO to and from the internal data pool

Recognized file extensions: .@

IO plugin to load and store 3D landmark lists

Recognized file extensions: .lmx

PLUGINS: 3dtransform/io

Binary (non-portable) serialized IO of 3D transformations

Recognized file extensions: .bbs

Virtual IO to and from the internal data pool

Recognized file extensions: .@

Vista storage of 3D transformations

Recognized file extensions: .v, .v3dt

XML serialized IO of 3D transformations

Recognized file extensions: .x3dt

EXAMPLE

Transform the landmarks given in input.lmx by applyning the transfromation stored in trans.v and store the result in output.lmx

mia-3dlandmarks-transform -i input.lmx -t trans.v -o output.lmx

AUTHOR(s)

Gert Wollny

COPYRIGHT

This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.

v2.4.7 USER COMMANDS