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ASSEMBLEPAIRS.PY(1) User Commands ASSEMBLEPAIRS.PY(1)

NAME

AssemblePairs.py - Assembles paired-end reads into a single sequence

DESCRIPTION

usage: AssemblePairs.py [--version] [-h] ...

Assembles paired-end reads into a single sequence

help:

show program's version number and exit
show this help message and exit

subcommands:

Assembly method
Assemble pairs by aligning ends.
Assemble pairs by concatenating ends.
reference
Assemble pairs by aligning reads against a reference database.
sequential
Assemble pairs by first attempting de novo assembly, then reference guided assembly.

output files:

assemble-pass
successfully assembled reads.
assemble-fail
raw reads failing paired-end assembly.

output annotation fields:

<user defined>
annotation fields specified by the --1f or --2f arguments.

AUTHOR


This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.

May 2020 AssemblePairs.py 0.6.0