NAME¶

convert_seq - conversion of sequence and alignment formats

SYNOPSIS¶

convert_seq [OPTION]

DESCRIPTION¶

convert_seq is used for sequence and alignment format conversion. Instead of using command line arguments it starts a conversation with the user where the desired function can be invoked by answering questions.

This program is used by the prof(1) secondary structure, accessibility and transmembrane helix predictor from Burkhard Rost.

OPTIONS¶

None. Answer questions printed on STDOUT by typing your choice into STDIN.

AUTHORS¶

Reinhard Schneider Mar, 1991 version 1.0 LION http://www.lion-ag/ Heidelberg

Ulrike Goebel Mar, 1997 version 1.1 LION http://www.lion-ag/ Heidelberg

Reinhard Schneider Mar, 1997 version 2.0 LION http://www.lion-ag/ Heidelberg

Burkhard Rost May, 1998 version 2.1 EMBL/LION Heidelberg

Burkhard Rost Oct, 1998 version 2.2

Laszlo Kajan <lkajan@rostlab.org> TU Muenchen, Germany

Guy Yachdav <gyachdav@rostlab.org> CUBIC (Columbia University, NY, USA), Technical University Munich (Munich, DE), BioSof LLC (USA)

SEE ALSO¶

prof(1), filter_hssp(1)