| REAPR-GAPRESIZE(1) | REAPR-GAPRESIZE(1) |
NAME¶
reapr-gapresize - calculates gap sizes based on read mapping
SYNOPSIS¶
reapr gapresize [options] <assembly.fasta> <in.bam> <avg-fragment-length> <max-fragment-length> <outfileprefix>
OPTIONS¶
-g <int>
Only consider gaps of at least this length [1]