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VFDBGENUS(1) User Commands VFDBGENUS(1)

NAME

VFDBgenus - Extract virulence genes by genus from the VFDB database

SYNOPSIS

VFDBgenus [-h] --infile INFILE [--genus GENUS]

DESCRIPTION

This tool is part of the SRST2 suite.

Extract virulence genes by genus from the VFDB database available at http://www.mgc.ac.cn/VFs/Down/CP_VFs.ffn.gz

OPTIONS

optional arguments:

show this help message and exit
Raw VFDB sequences file (fasta, e.g. download from http://www.mgc.ac.cn/VFs/Down/CP_VFs.ffn.gz)
Genus to extract (if not specified, all genera will be extracted to individual files)

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

June 2016 VFDBgenus 0.1.8