NAME¶

graphdump - build the compacted de Bruijn graph from many complete genomes

DESCRIPTION¶

USAGE:

graphdump

-k <integer> [-s <>] ... -f <seq|group|dot|gfa1|gfa2|fasta> [--prefix] [--] [--version] [-h] <file name>

Where:

-k <integer>, --kvalue <integer>

(required)

Value of k

-s <>, --seqfile <>

(accepted multiple times)

sequences file name

-f <seq|group|dot|gfa1|gfa2|fasta>, --format <seq|group|dot|gfa1|gfa2

|fasta>

(required)

Output format

--prefix

Add a prefix to segments in GFA (in case if you have genomes with identical FASTA headers)

--, --ignore_rest

Ignores the rest of the labeled arguments following this flag.

--version

Displays version information and exits.

-h, --help

Displays usage information and exits.

<file name>

(required)

input file name

This utility converts the binary output of TwoPaCo to another format

AUTHOR¶

This manpage was written by Andrius Merkys for the Debian distribution and
can be used for any other usage of the program.