NAME¶

aacomp - amino acid composition of protein sequences

SYNOPSIS¶

  aacomp [-f/--format FORMAT] [-h/--help] filename
  or
  aacomp [-f/--format FORMAT] < filename
  or
  aacomp [-f/--format FORMAT] -i filename

DESCRIPTION¶

This scripts prints out the count of amino acids over all protein sequences from the input file.

OPTIONS¶

The default sequence format is fasta. The sequence input can be provided using any of the three methods:

unnamed argument

  aacomp filename
    

named argument

  aacomp -i filename
    

standard input

  aacomp < filename
    

FEEDBACK¶

Mailing Lists¶

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs¶

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich¶

Email jason@bioperl.org

HISTORY¶

Based on aacomp.c from an old version of EMBOSS